Para presentaciones con Quarto

presentaciones
Author

Haly-en

Published

January 23, 2023

Comandos y tips para hacer presentaciones con Quarto


Yml para template de presentación tutos

```{markdown}
---
title: Tu título 
subtitle: tu nombre # puede ser en comillas o sin. 
author:   # Aquí van los nombres de los tutores o sinodales
  - name: Dr. A
    affiliations:
      - id: uni
        name: institucion
  - name: Dra. B
    affiliations:
      - name: FC-UNAM
  - name: Dra.C
    affiliations:
      - name: FC-UNAM
date: today
date-format: long 
format:
  revealjs: 
    theme: [default, custom.css, styles.scss]
    slide-number: c/t
    show-slide-number: all
    transition: fade
    background-transition: fade
    highlight-style: pygments
    #header-logo: logo-ibt/logo_ibt_600dpi.png 
    #footer: "Tutoral Numero__"
    width: 1280
    height: 920
    max-scale: 1.0
filters:
  - reveal-header
bibliography: references.bib
biblio-style: apa
code-wrap: auto
execute: 
  freeze: auto
---
```

Para ver cosas del PDB con molstar:

Para más información visitar la página Github extensión de molstar

```{markdown}
AQUí una diapositiva con fondo, y cargas el pdb descargado o desde el link directo al pdb...

## Cosa de molstar {background="#43464B"}

{{< mol-rcsb 7sgl >}}

```

Ejemplo de tabla con kable:

Code 
# Es más limpio importar los datos.

library(readr)
library(tibble)
library(kableExtra)
tbl1_weik2000 <- read_csv("Table1_Weik2000.csv" ) 
Rows: 6 Columns: 10
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr (10): Dataset, A, B, C, D, E, F, G, H, I

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
Code 
tbl1_weik2000 <- tibble::column_to_rownames(tbl1_weik2000, "Dataset")
T_table_weik <- t(tbl1_weik2000)
nomb_col <- colnames(T_table_weik)
kbl(T_table_weik ) %>%
  kable_classic(full_width = F) %>%
  kable_styling("striped") %>%
  column_spec(2, bold = T, color = "white", background = spec_color(1:9, end = 0.9, option = "D", direction = -1))
Resolution (Å) No unique reflections Redundancy $\langle I \rangle / \langle \sigma(I) \rangle$ Completeness (%) $R_{\mathrm{merge}}$ (%)
A 40-2.05 62401 2.1 16.4 (2.8) 99.0 (99.3) 4.7
B 40-2.1 56543 1.8 13.1 (1.9) 96.1 (96.9) 5.1
C 40-2.1 58334 1.8 13.8 (1.6) 99.0 (99.2) 5.2
D 40-2.3 44671 2.1 14.2 (1.9) 99.1 (99.4) 5.4
E 40-2.5 34910 2.1 13.4 (1.8) 99.0 (99.4) 5.8
F 40-2.65 29417 2.1 12.2 (1.7) 99.0 (99.1) 6.5
G 40-2.8 25004 2.1 10.7 (1.7) 98.9 (99.2) 7.1
H 40-2.9 21801 1.8 8.8 (1.8) 95.5 (98.6) 9.4
I 40-3.0 20415 2.1 9.0 (1.9) 98.8 (99.2) 8.6
Code 
knitr::asis_output('\U212B')

Å

Code 
#knitr::options("kableExtra.html.bsTable" = T)

Aquí la tabla anteriór pero sólo pegando el código generado por table generator.

Tabla weik

Dataset A B C D E F G H I
Resolution (Å) 40-2.05 40-2.1 40-2.1 40-2.3 40-2.5 40-2.65 40-2.8 40-2.9 40-3.0
No unique reflections 62401 56543 58334 44671 34910 29417 25004 21801 20415
Redundancy 2.1 1.8 1.8 2.1 2.1 2.1 2.1 1.8 2.1
〈I〉/σ〈I〉 16.4 (2.8) 13.1 (1.9) 13.8 (1.6) 14.2 (1.9) 13.4 (1.8) 12.2 (1.7) 10.7 (1.7) 8.8 (1.8) 9.0 (1.9)
Completeness (%) 99.0 (99.3) 96.1 (96.9) 99.0 (99.2) 99.1 (99.4) 99.0 (99.4) 99.0 (99.1) 98.9 (99.2) 95.5 (98.6) 98.8 (99.2)
Rmerge(%) 4.7 5.1 5.2 5.4 5.8 6.5 7.1 9.4 8.6

Tabla weik

Dataset A B C D E F G H I
Resolution (Å) 40-2.05 40-2.1 40-2.1 40-2.3 40-2.5 40-2.65 40-2.8 40-2.9 40-3.0
No unique reflections 62401 56543 58334 44671 34910 29417 25004 21801 20415
Redundancy 2.1 1.8 1.8 2.1 2.1 2.1 2.1 1.8 2.1
〈I〉/σ〈I〉 16.4 (2.8) 13.1 (1.9) 13.8 (1.6) 14.2 (1.9) 13.4 (1.8) 12.2 (1.7) 10.7 (1.7) 8.8 (1.8) 9.0 (1.9)
Completeness (%) 99.0 (99.3) 96.1 (96.9) 99.0 (99.2) 99.1 (99.4) 99.0 (99.4) 99.0 (99.1) 98.9 (99.2) 95.5 (98.6) 98.8 (99.2)
Rmerge(%) 4.7 5.1 5.2 5.4 5.8 6.5 7.1 9.4 8.6

Es más limpio importar los datos.

Code 
#Es más limpio importar los datos.
library(readr)
tbl1_weik2000 <- read_csv("Table1_Weik2000.csv")
Rows: 6 Columns: 10
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr (10): Dataset, A, B, C, D, E, F, G, H, I

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
Code 
library(knitr)
library(tidyr)
library(kableExtra)
tab <- kbl(tbl1_weik2000) %>%
  kable_classic(full_width = F) %>%
  row_spec(1, color = "lightgray", background = "darkred")
cat(tab)
Dataset A B C D E F G H I
Resolution (Å) 40-2.05 40-2.1 40-2.1 40-2.3 40-2.5 40-2.65 40-2.8 40-2.9 40-3.0
No unique reflections 62401 56543 58334 44671 34910 29417 25004 21801 20415
Redundancy 2.1 1.8 1.8 2.1 2.1 2.1 2.1 1.8 2.1
\(\langle I \rangle / \langle \sigma(I) \rangle\) 16.4 (2.8) 13.1 (1.9) 13.8 (1.6) 14.2 (1.9) 13.4 (1.8) 12.2 (1.7) 10.7 (1.7) 8.8 (1.8) 9.0 (1.9)
Completeness (%) 99.0 (99.3) 96.1 (96.9) 99.0 (99.2) 99.1 (99.4) 99.0 (99.4) 99.0 (99.1) 98.9 (99.2) 95.5 (98.6) 98.8 (99.2)
\(R_{\mathrm{merge}}\) (%) 4.7 5.1 5.2 5.4 5.8 6.5 7.1 9.4 8.6

flow chart

Texto que quiero que vaya al centro y en un cuadrado como los objetivos del proyecto o algo aasíAlgo cool

otro intento

```{markdown}
```{mermaid}
%%| label: fig-mermaid
%%| fig-width: 8
%%{
  init: {
    'theme': 'base',
    'themeVariables': {
      'primaryColor': '#bdbdbd',
      'primaryTextColor': '#000000',
      'primaryBorderColor': '#7C0000',
      'lineColor': '#980043',
      'secondaryColor': '#bdbdbd',
      'tertiaryColor': '#fff'
    }
  }
}%%
flowchart TD
 A(INICIO) -->|Seleccionar| C(otra cosa <br> con salto de linea)
 C --> B(Hacer algo)
 B --> D(otra cosa )
 D --> E(Salto de línea <br> más cosas interesantes )
 E --> F( Terminar para <br> ir concluyendo)
 F --> id1>Realizar un análisis comparativo]

```
%%{
  init: {
    'theme': 'base',
    'themeVariables': {
      'primaryColor': '#bdbdbd',
      'primaryTextColor': '#000000',
      'primaryBorderColor': '#7C0000',
      'lineColor': '#980043',
      'secondaryColor': '#bdbdbd',
      'tertiaryColor': '#fff'
    }
  }
}%%
flowchart TD
 A(INICIO) -->|Seleccionar| C(otra cosa <br> con salto de linea)
 C --> B(Hacer algo)
 B --> D(otra cosa )
 D --> E(Salto de línea <br> más cosas interesantes )
 E --> F( Terminar para <br> ir concluyendo)
 F --> id1>Realizar un análisis comparativo]
Figure 1

Figuras

```{markdown}

::: {layout-nrow="2" layout-ncol="1" fig-align="center" width="100%"}
![](Alguna figura.png)

![](Otra figura.png)


Modificadas de [@Weik2000].
:::
```

video

Figure 2: Elephant

Radiólisis del agua


rayos X⚡

H2O  ⟶   H2O+● +  e ⎻                   (1)

. . .

rayos X⚡

H2O  ⟶  H2O*                               (2)

. . .

H2O+● +  H2O⟶ H3O* + OH+●      (3)

. . .

e ⎻ +   nH2O⟶ e ⎻solv.                  (4)

. . .

H2O* +  H2O⟶ H● + OH●               (5)

. . .

e⎻solv.  +   H+●⟶ H3O* + OH+●       (6)

Tomado de @Garman2010

Objetivos

Objetivo

Aquí texto importante de los objetivos [**texto reasaltado**]{.big}

Customs

```{markdown}

/*-- scss:rules --*/

.reveal a {
    line-height: 1.5em;
    color: #eb811b;
    font-weight: 300;
}

.reveal .footer a {
    color: #eb811b !important;
}

.reveal p {
    font-weight: 300;
}

.reveal .slide ul li,
.reveal .slide ol li {
    font-weight: 300;
}

// maximum height of code blocks before scrolling is used
.reveal pre.sourceCode code {
    max-height: 700px; // default 500
}


// Aqui modificas el subtitulo que es tu nombre //
p.subtitle {
    // margin-top: -10px;
    // padding-bottom: -20px;
    color: #1a292c;
    text-shadow: none;
    font-weight: 300;
    font-size: 40px;
    text-align: left; //puede ser center o right
    margin-left: 15px;
}
p.author {
    color: #1a292c;
    text-shadow: none;
    font-weight: 300;
    font-size: 30px;
    text-align: left;
    margin-left: 15px;
    margin-bottom: -10px;
    margin-top: 10px;
}

p.date {
    color: #1a292c;
    text-shadow: none;
    font-weight: 300;
    font-size: 30px;
    text-align: center;
    margin-left: 15px;
    // margin-bottom: -30px;
}

p.subtitle:after {
    content: "";
    display: block;
    border: none;
    background-color: #eb811b;
    color: #eb811b;
    height: 1px;
    margin: 25px 0 25px;
}

// Section break slide
hr,
h1::after {
    content: "";
    display: block;
    border: none;
    background-color: #eb811b;
    color: #eb811b;
    height: 1px;
    margin: 1em 10px 0 10px;
}

// Override h1 style for title slide (remove section break slide style)
hr,
h1.title::after {
    content: "";
    display: block;
    border: none;
    background-color: transparent !important;
    color: transparent !important;
    height: 0px;
    margin: 0px !important;
}

h2::after.title {
    margin: 0px 0px 0px 0;
}

//Aquí moficas el número de páginas//
.reveal .slide-number a {
    font-size: 110%;
    background-color: #fafafa;
    border-radius: 12px;
    position: margin-left;
    padding: 5px;
}

// aquí es donde modificas la parte del título princial//
h1.title {
    color: #ffeda0;
    background-color: #23373b;
    font-size: 60px;
    text-shadow: none;
    font-weight: 400;
    text-align: center;
    margin-left: 15px;
    padding-top: 10px;
}
.reveal h2 {
    background-color:#d9d9d9;
    padding: 5px 0px 5px 10px;
    color: #800026;
    border-radius: 12px;
}
.middle {
  vertical-align: middle;
}

.center img {
  display: block;
  margin-left: auto;
  margin-right: auto;
}

.center {
  text-align: center;
}

.medium {
  font-size: 0.85em;
}

.small {
  font-size: 0.75em;
}

.molstar-app {
  position: relative;
  width: 100%;
  height: 500px;
  padding-bottom: 56.25%;
}

.reveal .progress {
    color: gray;
  height: 8px;
}

iframe {
    display: block;
    margin-right: auto;
    margin-left: auto;
}

/*********************************************
 * SLIDES
 *********************************************/

.reveal {
    position: relative;
    width: 100%;
    height: 100%;
    overflow: hidden;
    touch-action: pinch-zoom;
}

.box {
  border-radius: 10px;
  background-color: yellow;
  padding: 1em;
  text-align: left;
  vertical-align: center;
  border: 5px solid $presentation-heading-color;
}

.blackbox {
  padding: 1em;
  position: relative;
  background: white;
  color: black;
  border: 2px solid orange;
  border-radius: 10px;
  
}

.rectangle {
  padding: 1em;
  position: relative;
  background: none;
  color: black;
  border: 2px solid orange;
  border-radius: 10px;
  
}
/*-- scss:defaults --*/

// fonts
@import url(https://fonts.googleapis.com/css?family=Fira+Sans:300,300i,400,400i,500,500i,700,700i);
@import url(https://cdn.rawgit.com/tonsky/FiraCode/1.204/distr/fira_code.css);
@import url("https://fonts.googleapis.com/css?family=Roboto+Mono|JetBrains+Mono&display=swap");
@import url("https://fonts.googleapis.com/css?family=Roboto:300,400,500,700&display=swap");

$font-family-sans-serif: "Roboto", "Fira Sans", "Droid Serif", serif !default;
$font-family-monospace: "JetBrains Mono", "Fira Code", monospace;
/*$font-family-sans-serif: "  Crimson Text  ", sans-serif;*/
/*$presentation-heading-color: #081d58 !default;*/
$presentation-title-slide-text-align: "center";
$presentation-h2-slide-text-align: "center";
$code-block-font-size: 0.6em;
$code-color: #5f5f5f;
$presentation-h2-font-size: 1.4em;
$presentation-font-size-root: 32px;
$presentation-line-height: 1.5em;
$presentation-heading-font-weight: 400;


/*-- scss:rules --*/

.reveal .custom-url a {
  position: absolute;
  color: #81a2be;
  font-size: 1.5em;
  text-align: right;
  right: 20px;
  top: 570px;
}

details>summary {
  font-size: 0.75em;
}


.medium {
  font-size: 0.85em;
}

.small {
  font-size: 0.75em;
}
.big {
  font-size: 1.2em;
}

.reveal .slide .in-out {
  margin-top: 0.5em;
  margin-bottom: 0.5em;
  padding-top: 0.1em;
  padding-bottom: 0.1em;
  padding-left: 1em;
  background: #E8E8E8;
  font-family: $font-family-monospace;
  font-size: 0.6em;
}

.reveal .slide .goal {
  margin-top: 0.5em;
  margin-bottom: 0.5em;
  padding-top: 0.1em;
  padding-bottom: 0.1em;
  padding-left: 1em;
  background: #ccddeb;
}

.molstar-app {
  position: relative;
  width: 100%;
  height: 500px;
  padding-bottom: 56.25%;
}

span {
  content: "\212B";
}

.tg  {border-collapse:collapse;border-spacing:0;}
.tg td{border-color:black;border-style:solid;border-width:1px;font-family:Arial, sans-serif;font-size:14px;
  overflow:hidden;padding:10px 5px;word-break:normal;}
.tg th{border-color:black;border-style:solid;border-width:1px;font-family:Arial, sans-serif;font-size:14px;
  font-weight:normal;overflow:hidden;padding:10px 5px;word-break:normal;}
.tg-pghf{background-color:#225EA8;color:#FFF;text-align:center;vertical-align:top}
.tg-7p6x{background-color:#081D57;color:#FFF;text-align:center;vertical-align:top}
.tg-baqh{text-align:center;vertical-align:top}
.tg-yxcw{background-color:#FFFFDA;border-color:inherit;text-align:center;vertical-align:top}
.tg-24tk{background-color:#F2F2F2;border-color:inherit;font-weight:bold;text-align:center;vertical-align:top}
.tg-2p8v{background-color:#F2F2F2;font-weight:bold;text-align:center;vertical-align:top}
.tg-u7h8{background-color:#EDF9B1;border-color:inherit;text-align:center;vertical-align:top}
.tg-u9n8{background-color:#C7E9B4;text-align:center;vertical-align:top}
.tg-u1u2{background-color:#7FCDBB;text-align:center;vertical-align:top}
.tg-k470{background-color:#40B6C5;text-align:center;vertical-align:top}
.tg-eg3g{background-color:#1D91C0;color:#FFF;text-align:center;vertical-align:top}

```

  • Aquí aparece en una colum